Welcome to Mallika's Home Page! Bioinformatics and Systems Biology Research group lead by Prof. Adam Godzik at Burnham Institute for Medical
Research . I am a member of JCMM (Joint Center for Molecular Modeling). JCMM is a joint center
between
the Burnham Institute for Medical Research and the CSE (Computer
Science and Engineering) at the UCSD University of California, SanDiego.
I have received my PhD from the Bioinformatics
Research Centre
Department of Computing
Science at University
of Glasgow Scotland lead by Prof.David Gilbert. My PhD thesis entitled as , "A Novel Method for Comparing Topological Models of Protein Structures Enhanced with ligand Interaction Information". TOPS+ server is available in here .
My short term project as a postdoctoral researcher from Division of Gene Regulation and Expression lead by Professor Angus Lamond
Wellcome Trust Biocentre ,
University of Dundee was on "Development of a
Splicing Factor Database". I have also worked in Dr.R.Sowdhamini's lab,
at NCBS Bangalore , India.
There I have developed the PASS2 : a Semi-Automated database of Protein Alignments organised as
Structural Superfamilies.
Recently we have developed a Method -
"TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model".
Servers and Database Links - Related to My Project
TOPS++FATCAT Server
TOPS+ Server
PASS2
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Contact Information http://bioinformatics.burnham.org/~mallika/
