Welcome to Mallika's Home Page!




I moved to Center for Bioinformatics at the University of Kansas lead by Prof. Ilya Vakser.
Visit my new website from here!

Greetings! I am working as a postdoctoral research associate in Bioinformatics and Systems Biology Research group lead by Prof. Adam Godzik at Sanford-Burnham Medical Research Institute. I am a member of Joint Center for Molecular Modeling (JCMM). JCMM is a joint center between Sanford-Burnham and the Computer Science and Engineering (CSE) department at University of California, San Diego (UCSD).

I received my PhD from the Bioinformatics Research Centre Department of Computing Science at University of Glasgow United Kingdom lead by Prof.David Gilbert. My PhD thesis entitled as , "A Novel Method for Comparing Topological Models of Protein Structures Enhanced with ligand Interaction Information". TOPS+ server is available here.

My short term project as a postdoctoral researcher from the Division of Gene Regulation and Expression lead by Professor Angus Lamond , Wellcome Trust Biocentre, University of Dundee was on "Development of a Splicing Factor Database". I have also worked in Dr.R.Sowdhamini's lab, at National Centre for Biological Sciences (NCBS) is part of the Tata Institute of Fundamental Research (TIFR) and is located in Bangalore, India. There I have developed PASS2: a Semi-Automated database of Protein Alignments organised as Structural Superfamilies.

Recently we have developed a Method - "TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model".


Servers and Database Links - From My Project

  • Fast Database Search WebServer for Similar and Fexible 3D Structures using TOPS++FATCAT Method
  • TOPS+ Server
  • PASS2





  • [CV] [RESEARCH] [PUBLICATIONS] [TOPS++FATCAT] [TOPS+] [BIOINFORMATICS TOOLS] [UPCOMING CONFERENCES] [PHOTOS]

    Contact Information
    Dr. Mallika Veeramalai,
    Postdoctoral Research Associate,
    Bioinformatics and Systems Biology,
    Burnham Institute for Medical Research,
    10901 North Torrey Pines Road,
    La Jolla, San Diego, CA 92037, US.

    phone : +1 858 952 3493
    fax : +1 858 795 5249
    url : http://bioinformatics.burnham.org/~mallika/
    email : mallikav@burnham.org
    mallikaveeramalai@gmail.com

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