A detailed comparison of the performances of SEA and other programs

pro	len	ide		SEA_all	SEA_c50	SEA_c30	SEA_c10	SEA_c5	SEA_1d	SEA_true	FFAS	BLAST	CE
1lliA	89	33	RMSD	2.65	2.02	2.03	2.03	2.20	9.23	2.03	4.99	1.74	1.95
1r69	63		shift	0.92	0.96	0.94	0.94	0.91	-0.10	0.94	0.78	0.68	1.00
			ali	62	60	57	57	57	56	57	89	31	61
1bcfA	158	18	RMSD	3.98	2.99	2.77	2.50	12.14	7.88	2.35	13.61	-	1.75
1rcd	171		shift	0.67	0.82	0.83	0.84	0.15	0.30	0.90	0.29	-	1.00
			ali	164	160	159	161	155	101	159	184	14	158
1yrnB	78	12	RMSD	5.27	4.82	4.50	3.20	6.44	-	3.58	14.97	-	4.56
1mseC	105		shift	-0.08	-0.08	-0.08	-0.07	-0.09	-	-0.07	0.04	-	1.00
			ali	60	60	60	53	61	19	52	108	12	73
1esfA	229	18	RMSD	9.04	4.62	4.81	5.14	14.34	10.54	4.66	8.73	3.46	2.81
2tssA	194		shift	0.68	0.77	0.77	0.72	0.26	0.46	0.75	0.57	0.55	1.00
			ali	222	212	224	222	212	195	219	233	93	214
1ash	147	10	RMSD	3.80	4.36	4.38	3.54	3.70	4.06	3.02	4.16	-	2.31
1ithA	141		shift	0.75	0.62	0.63	0.76	0.76	0.37	0.81	0.70	-	1.00
			ali	146	147	146	143	142	68	124	149	10	146
1hbg	147	19	RMSD	2.97	4.71	2.82	5.74	3.11	6.22	3.08	5.53	-	2.11
1mbd	153		shift	0.89	0.76	0.91	0.70	0.82	0.49	0.80	0.70	-	1.00
			ali	153	150	153	150	153	126	155	158	0	152
1iyu	79	17	RMSD	2.85	2.85	2.85	2.84	2.85	7.55	2.24	12.04	4.63	2.57
1fyc	106		shift	0.91	0.91	0.91	0.90	0.91	-0.09	-0.08	0.64	-0.09	1.00
			ali	75	75	75	74	75	45	25	105	29	77
1prtF	98	14	RMSD	4.83	4.83	4.85	6.53	12.93	7.42	3.37	7.37	-	2.39
1ltsD	103		shift	0.69	0.69	0.69	0.35	-0.11	-0.07	0.69	0.58	-	1.00
			ali	90	90	89	94	57	40	94	113	0	96
1wiu	93	10	RMSD	3.41	3.41	3.41	3.45	3.45	15.44	3.54	4.08	12.24	2.15
1tiu	89		shift	0.82	0.82	0.82	0.80	0.80	0.31	0.65	0.68	0.35	1.00
			ali	89	89	89	89	89	85	67	95	78	90
1mjc	69	19	RMSD	3.78	6.36	3.14	6.90	6.74	3.46	-	7.00	4.59	2.44
1sro	76		shift	0.65	0.56	0.72	0.49	0.56	0.44	-	0.57	0.33	1.00
			ali	70	70	70	72	72	30	11	76	36	72

The pro column lists the pdb code of each protein. The len column lists the length of each protein. The ide column lists the identity percentage of each protein pair calculated from the structural alignments by CE. The ali row lists the alignment length of each pair. The low RMSD values caused by short alignments are shown in italic fonts.