VISSA

VISSA, (VIsualize Structure Sequence Alignment) is a program that can visualize both multiple seeuqnce alignment and 3D structure and can also map residues from alignment onto 3D structure and vice versa.

This program can help you with following analysis:

Run, display, analyze multiple sequence alignment
Display 3D structure
Map and highlight residues of interest from alignment onto 3D structure
Define structural site on 3D structure
Map structural sites on multiple sequence alignment
Make publication quality image
Many other analysis tools

The program is written by Weizhong Li, liwz@sdsc.edu at Adam Godzik's lab

Document
Documents are here: Installation, Installation for Windows' version, User_guide.txt, User_guide.doc, User_guide.pdf.

Download
VISSA can be downloaded from here

Please cite:
"VISSA, A program to sisualize structural features from structure sequence alignment", Weizhong Li and Adam Godzik Bioinformatics, (2006) 22:887-888 PDF Pubmed